Plug your silber box back in, disconnect the boost signal tube between the electronics box and the solenoid, start sled. If the BLUE light is on with the boost reference line disconnected, you have a BAD controller. the blue light should only come on when the electronics box sees boost.
I had a starting issue with my silber electronics a couple years ago. sounds like the same thing, sometimes it just would not start back up. i would have to hold FULL throttle and pull it a bunch of times it would finally start (just like a flooded old carb sled) then it would run fine again. it seemed pretty random.
I have since gone with a different brand of control box and my problem has gone away.
Have you tried starting the sled the way i have mentioned above, I believe the computer sees WOT (wide open throttle) and shuts the injectors off for starting.
Good luck, these kits are great.