This wound up being concluded. The issue was that the machine was only running on one cylinder because the fuel line routing in place was really, really wrong. I just didn't have the experience at the time to see it.
Like, one line was going directly to a carburetor and one was going to the fuel pump and off the fuel pump the two outputs were going directly to a fuel shutoff valve.
Could I have seen that sooner? Sure, I guess. But it was crazy that it was so messed up so it took me a while to analyze that piece of the problem.