Cranking compression and compression ratio are two completely different animals. Remember that fuel is your number one enemy. You can run 13.1 at sea level but GOOD 91 octane is a must. Just because the pump says 91 doesn't mean that is what actually is going in the tank. IMO if you want an aftermarket head and you want to "feel" the difference, run a higher compression than pump fuel for your elevation and add enough race fuel accordingly otherwise the gains are minimal for the amount invested.
A few years ago the rule of thumb was:
13.1 0-3K
13.5 3-6K
14.1 6-9K
14.7 9K plus
Now with fuel quality dropping at the pump those numbers still hold true, BUT 1-2 gallons of race fuel is needed in order to keep detonation under control. If no race gas is available or not wanted you need to drop the ratio to:
12.5 0-3K
13.1 3-6K
13.5 6-9K
14.1 9-12K
14.7 12K plus
So far this has worked pretty good as of late.
Also, SOME of the aftermarket head builders for SOME of the manufacturers require a leaner mixture in order for the head to work properly, if the sled is running rich because of a more efficient head performance will be down. The DET threshold will be raised but overall perfromance will be down as well.
Lastly remember that the squish should be measured and followed to the head builders recommended dimensions. Too tight of squish can cause problems and too loose can cause a loss in performance. Not always a bolt on and go.
Holy cow that got long, sorry to drag on.