I don't weld any on the pipe itself, just the Y-pipe. I will bead blast it and weld the seem with my wire feed (mig) welder. Then I ceramic coat the Y-pipe again. I am suspicious about the ceramic coating holding too much heat in the Y-pipe and causing issues of cracking. If everybody else is cracking with painted Y-pipes then maybe the ceramic isn't an issue.
What type of welding have you done on the pipe? Have you tried any aftermarket pipes?