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Once you score or melt the top layer (clearcoat) on a carbon fiber part, you have the potential for a problem down the road. It isn't a huge issue but it can weaken it.
Its not the actual carbon fiber overstructure tube that is melting. It is the plastic clamp that goes around the tube that the coil packs attach too. Not thay big of deal in my opinion as it shouldn't effect it in an adverse way. Just ride it.
I don't know anything about this problem. However, I question what advantage that you think that the can gives you. It is probably louder (BAD), probably lighter (MARGINALLY) and probably does not make more horsepower (PROBABLY LESS). For my money, I would take it off and put the stock one back on. They work great, are not that heavy, are reasonably quiet, and they make good power.
I am sure this not what you wanted to hear but I felt the need to say it. My dealer (very reputable) does not recommend replacing the stock can. If they thought that it was an advantage, they would recommend it. It is your money but I would take it off, put it back in the box, and return it with a refund request. Carbon fiber is a great material but excess heat is a bad thing for it. Why take the risk for a little different sound, a little less weight and nothing else?