here is the calibration instructions from boondockers site...
Calibration
Calibration is required only if using a Boondocker Fuel Control Box. Even if you are using a Boondocker Fuel Control Box, if you are using a separate pressure transducer, this calibration is NOT required.
The EBC provides an electrical signal to the Boondocker Fuel Control Box that represents boost pressure. The Control Box uses this signal to determine how much fuel to add for boost air. It is vital that when boost is zero, the Control Box reads zero. This is to avoid adding fuel at idle or failing to add enough fuel when on boost. This signal is calibrated at the factory so will be very close, but might need minor adjustment. Go to the first “STATS” screen on the Control Box. If it shows zero boost, then no calibration is needed. If it shows positive or negative boost, then with the motor idling scroll down to “PT CAL” in the configuration menu. If “PT CAL” does not appear, go to the altitude screen and hold the button for five seconds until it advances to “CFG”. After “PT” and “CAL” are displayed, the screen will display a number. Hold the button one second to make this number flash. Use short pushes of the button on the EBC face to adjust this value up or down. Hold the button down for one second to change direction, shown by the “+” or “-” sign. Change the number until control box reads zero boost. Changing the direction twice without making an adjustment will lock the calibration and the flashing will stop. More information on using the buttons and menus follows.