A friend of mine does powder coating and he always masks off cooler inlets and outlets etc,and I'm sure there is a way to mask off the total cooler if you wanted.I did my M1000 bulkhead and the cooler is incorporated and it worked out good,and no ill cooling effects.Also for example if you powder coat your better boards(running boards),the snow doesn't stick to the powder coating,weather that be a good thing or not for your coolers, that would be your preference.