When changing the intake what do you do with the small coming off intake (one to intercooler, one that goes in the back of stock intake?
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Not clear on which line you are referring to - if it is the 5/8" hose from the valve cover, using a K&N breather filter works fine. If it is the small reference line from the intake 90, it goes to the intercooler... a pic of what you are referring to would help a bunch.
Those are the ones